Processamento ótico e digital de sinal em sistemas de transmissão com multiplexagem por divisão espacial

The present thesis focuses on the development of optical and digital signal processing techniques for coherent optical transmission systems with spacedivision multiplexing (SDM). According to the levels of spatial crosstalk, these systems can be grouped in the ones with and the ones without spatial selectivity; drastically changing its operation principle. In systems with spatial selectivity, the mode coupling is negligible and therefore, an arbitrary spacial channel can be independently routed through the optical network and post-processed at the optical coherent receiver. In systems without spatial selectivity, mode coupling plays a key role in a way that spatial channels are jointly transmitted and post-processed at the optical coherent receiver. With this in mind, optical switching techniques for SDM transmission systems with spatial selectivity are developed, whereas digital techniques for space-demultiplexing are developed for SDM systems without spatial selectivity. With the purpose of developing switching techniques, the acoustic-optic effect is analyzed in few-mode fibers (FMF)s and in multicore fibers (MCF)s. In FMF, the signal switching between two arbitrary modes using flexural or longitudinal acoustic waves is numerically and experimentally demonstrated. While, in MCF, it is shown that a double resonant coupling, induced by flexural acoustic waves, allows for the signal switching between two arbitrary cores. Still in the context of signal switching, the signal propagation in the multimodal nonlinear regime is analyzed. The nonlinear Schrödinger equation is deduced in the presence of mode coupling, allowing the meticulous analysis of the multimodal process of four-wave mixing. Under the right conditions, it is shown that such process allows for the signal switching between distinguishable optical modes. The signal representation in higher-order Poincaré spheres is introduced and analyzed in order to develop digital signal processing techniques. In this representation, an arbitrary pair of tributary signals is represented in a Poincaré sphere, where the samples appear symmetrically distributed around a symmetry plane. Based on this property, spatial-demultiplexing and mode dependent loss compensation techniques are developed, which are independent of the modulation format, are free of training sequences and tend to be robust to frequency offsets and phase fluctuations. The aforementioned techniques are numerically validated, and its performance is assessed through the calculation of the remaining penalty in the signal-to-noise ratio of the post-processed signal. Finally, the complexity of such techniques is analytically described in terms of real multiplications per sample.A presente tese tem por objectivo o desenvolvimento de técnicas de processamento ótico e digital de sinal para sistemas coerentes de transmissão ótica com multiplexagem por diversidade espacial. De acordo com a magnitude de diafonia espacial, estes sistemas podem ser agrupados em sistemas com e sem seletividade espacial, alterando drasticamente o seu princípio de funcionamento. Em sistemas com seletividade espacial, o acoplamento modal é negligenciável e, portanto, um canal espacial arbitrário pode ser encaminhado de forma independente através da rede ótica e pós-processado no recetor ótico coerente. Em sistemas sem seletividade espacial, o acoplamento modal tem um papel fulcral pelo que os canais espaciais são transmitidos e pós-processados conjuntamente. Perante este cenário, foram desenvolvidas técnicas de comutação entre canais espaciais para sistemas com seletividade espacial, ao passo que para sistemas sem seletividade espacial, foram desenvolvidas técnicas digitais de desmultiplexagem espacial. O efeito acústico-ótico foi analisado em fibras com alguns modos (FMF) e em fibras com múltiplos núcleos (MCF) com o intuito de desenvolver técnicas de comutação de sinal no domínio ótico. Em FMF, demonstrou-se numérica e experimentalmente a comutação do sinal entre dois modos de propagação arbitrários através de ondas acústicas transversais ou longitudinais, enquanto, em MCF, a comutação entre dois núcleos arbitrários é mediada por um processo de acoplamento duplamente ressonante induzido por ondas acústicas transversais. Ainda neste contexto, analisou-se a propagação do sinal no regime multimodal não linear. Foi deduzida a equação não linear de Schrödinger na presença de acoplamento modal, posteriormente usada na análise do processo multimodal de mistura de quatro ondas. Nas condições adequadas, é demonstrado que este processo permite a comutação ótica de sinal entre dois modos de propagação distintos. A representação de sinal em esferas de Poincaré de ordem superior é introduzida e analisada com o objetivo de desenvolver técnicas de processamento digital de sinal. Nesta representação, um par arbitrário de sinais tributários é representado numa esfera de Poincaré onde as amostras surgem simetricamente distribuídas em torno de um plano de simetria. Com base nesta propriedade, foram desenvolvidas técnicas de desmultiplexagem espacial e de compensação das perdas dependentes do modo de propagação, as quais são independentes do formato de modulação, não necessitam de sequências de treino e tendem a ser robustas aos desvios de frequência e às flutuações de fase. As técnicas referidas foram validadas numericamente, e o seu desempenho é avaliado mediante a penalidade remanescente na relação sinal-ruído do sinal pós-processado. Por fim, a complexidade destas é analiticamente descrita em termos de multiplicações reais por amostra.Programa Doutoral em Engenharia Eletrotécnic

Produção e caracterização de micro-fibras ópticas

Mestrado em Engenharia FísicaNesta dissertação são abordados vários aspectos relacionados com microfibras ópticas. É descrita a propagação de um campo óptico numa micro-fibra óptica. Resolve-se a equação de dispersão para uma micro-fibra óptica e verifica-se que esta pode suportar mais que um modo guiado. São calculados os índices de refracção efectivos para os primeiros cinco modos guiados numa microfibra óptica. É também discutido o acoplamento modal nestas estruturas ópticas e como este pode descrever a transmitância destas. Calculou-se o raio do modo, o coeficiente não linear e a dispersão das micro-fibras em função do raio da bainha destas. Descreve-se o sistema experimental desenvolvido para a produção de microfibras, assim como as limitações deste, e de que forma estas foram ultrapassadas. Enumeram-se todos os cuidados a ter antes, durante e após a produção das micro-fibras ópticas. Por fim, as micro-fibras óptica produzidas são caracterizadas, mede-se o raio destas, testando a precisão do sistema experimental desenvolvido. O acoplamento modal é observado ao longo do processo de produção, assim como no espectro de transmissão da micro-fibra produzida. É também estimado o coeficiente não linear das micro-fibras produzidas através do processo estimulado de mistura de quatro ondas.This dissertation addressed various aspects related to optical microfibers. The propagation of an optical field in a microfiber is described. The dispersion equation for a microfiber is solved, and it is found that it can support more than one guided mode. The effective refractive indices are calculated for the first five guided modes in a microfiber. The modal coupling is discussed in these optical structures and how the transmittance can be described for these. The radius of the mode, the nonlinear coefficient and dispersion of microfibers are calculated in order to cladding radius. The experimental system developed for the production of microfibers is described, as well the limitations of this, and how these were overcome. We explain the precautions before, during and after production of optical microfibers. Finally, the optical microfibers are characterized, the diameters are measured testing the accuracy of the experimental system developed. The modal coupling is observed during the production process, as well the transmission spectrum. The nonlinear coefficient of the microfibers produced is estimated through the process of stimulated four wave mixing

Building a Portuguese Coalition for Biodiversity Genomics

The diverse physiography of the Portuguese land and marine territory, spanning from continental Europe to the Atlantic archipelagos, has made it an important repository of biodiversity throughout the Pleistocene glacial cycles, leading to a remarkable diversity of species and ecosystems. This rich biodiversity is under threat from anthropogenic drivers, such as climate change, invasive species, land use changes, overexploitation or pathogen (re)emergence. The inventory, characterization and study of biodiversity at inter- and intra-specific levels using genomics is crucial to promote its preservation and recovery by informing biodiversity conservation policies, management measures and research. The participation of researchers from Portuguese institutions in the European Reference Genome Atlas (ERGA) initiative, and its pilot effort to generate reference genomes for European biodiversity, has reinforced the establishment of Biogenome Portugal. This nascent institutional network will connect the national community of researchers in genomics. Here, we describe the Portuguese contribution to ERGA’s pilot effort, which will generate high-quality reference genomes of six species from Portugal that are endemic, iconic and/or endangered, and include plants, insects and vertebrates (fish, birds and mammals) from mainland Portugal or the Azores islands. In addition, we outline the objectives of Biogenome Portugal, which aims to (i) promote scientific collaboration, (ii) contribute to advanced training, (iii) stimulate the participation of institutions and researchers based in Portugal in international biodiversity genomics initiatives, and (iv) contribute to the transfer of knowledge to stakeholders and engaging the public to preserve biodiversity. This initiative will strengthen biodiversity genomics research in Portugal and fuel the genomic inventory of Portuguese eukaryotic species. Such efforts will be critical to the conservation of the country’s rich biodiversity and will contribute to ERGA’s goal of generating reference genomes for European species.info:eu-repo/semantics/publishedVersio

MAMMALS IN PORTUGAL : A data set of terrestrial, volant, and marine mammal occurrences in P ortugal

Mammals are threatened worldwide, with 26% of all species being includedin the IUCN threatened categories. This overall pattern is primarily associatedwith habitat loss or degradation, and human persecution for terrestrial mam-mals, and pollution, open net fishing, climate change, and prey depletion formarine mammals. Mammals play a key role in maintaining ecosystems func-tionality and resilience, and therefore information on their distribution is cru-cial to delineate and support conservation actions. MAMMALS INPORTUGAL is a publicly available data set compiling unpublishedgeoreferenced occurrence records of 92 terrestrial, volant, and marine mam-mals in mainland Portugal and archipelagos of the Azores and Madeira thatincludes 105,026 data entries between 1873 and 2021 (72% of the data occur-ring in 2000 and 2021). The methods used to collect the data were: live obser-vations/captures (43%), sign surveys (35%), camera trapping (16%),bioacoustics surveys (4%) and radiotracking, and inquiries that represent lessthan 1% of the records. The data set includes 13 types of records: (1) burrowsjsoil moundsjtunnel, (2) capture, (3) colony, (4) dead animaljhairjskullsjjaws, (5) genetic confirmation, (6) inquiries, (7) observation of live animal (8),observation in shelters, (9) photo trappingjvideo, (10) predators dietjpelletsjpine cones/nuts, (11) scatjtrackjditch, (12) telemetry and (13) vocalizationjecholocation. The spatial uncertainty of most records ranges between 0 and100 m (76%). Rodentia (n=31,573) has the highest number of records followedby Chiroptera (n=18,857), Carnivora (n=18,594), Lagomorpha (n=17,496),Cetartiodactyla (n=11,568) and Eulipotyphla (n=7008). The data setincludes records of species classified by the IUCN as threatened(e.g.,Oryctolagus cuniculus[n=12,159],Monachus monachus[n=1,512],andLynx pardinus[n=197]). We believe that this data set may stimulate thepublication of other European countries data sets that would certainly contrib-ute to ecology and conservation-related research, and therefore assisting onthe development of more accurate and tailored conservation managementstrategies for each species. There are no copyright restrictions; please cite thisdata paper when the data are used in publications.info:eu-repo/semantics/publishedVersio

Mammals in Portugal: a data set of terrestrial, volant, and marine mammal occurrences in Portugal

Mammals are threatened worldwide, with ~26% of all species being included in the IUCN threatened categories. This overall pattern is primarily associated with habitat loss or degradation, and human persecution for terrestrial mammals, and pollution, open net fishing, climate change, and prey depletion for marine mammals. Mammals play a key role in maintaining ecosystems functionality and resilience, and therefore information on their distribution is crucial to delineate and support conservation actions. MAMMALS IN PORTUGAL is a publicly available data set compiling unpublished georeferenced occurrence records of 92 terrestrial, volant, and marine mammals in mainland Portugal and archipelagos of the Azores and Madeira that includes 105,026 data entries between 1873 and 2021 (72% of the data occurring in 2000 and 2021). The methods used to collect the data were: live observations/captures (43%), sign surveys (35%), camera trapping (16%), bioacoustics surveys (4%) and radiotracking, and inquiries that represent less than 1% of the records. The data set includes 13 types of records: (1) burrows | soil mounds | tunnel, (2) capture, (3) colony, (4) dead animal | hair | skulls | jaws, (5) genetic confirmation, (6) inquiries, (7) observation of live animal (8), observation in shelters, (9) photo trapping | video, (10) predators diet | pellets | pine cones/nuts, (11) scat | track | ditch, (12) telemetry and (13) vocalization | echolocation. The spatial uncertainty of most records ranges between 0 and 100 m (76%). Rodentia (n =31,573) has the highest number of records followed by Chiroptera (n = 18,857), Carnivora (n = 18,594), Lagomorpha (n = 17,496), Cetartiodactyla (n = 11,568) and Eulipotyphla (n = 7008). The data set includes records of species classified by the IUCN as threatened (e.g., Oryctolagus cuniculus [n = 12,159], Monachus monachus [n = 1,512], and Lynx pardinus [n = 197]). We believe that this data set may stimulate the publication of other European countries data sets that would certainly contribute to ecology and conservation-related research, and therefore assisting on the development of more accurate and tailored conservation management strategies for each species. There are no copyright restrictions; please cite this data paper when the data are used in publications